Public Image Datasets

Below are publicly available datasets from researchers at the Donald Danforth Plant Science Center. For a comprehensive database of public datasets for plant phenotyping, see the Plant Image Analysis Datasets website maintained by Guillaume Lobet at http://www.plant-image-analysis.org/dataset.

The datasets below are available through one or more of the following services: http, globus, CyVerse

Plant Species Number of Images Plants Per Image Image Type(s) Tissue Type Experiment Type Publication Link to Data
Oryza sativa ~57,000 1 VIS Root Growth Topp et al. 2013 Link
Oryza sativa ~1,400 1 3D reconstruction Root Growth Topp et al. 2013 Link
Setaria viridis, Setaria italica ~79,200 1 VIS, NIR, PSII Shoot Growth: Water-limited Fahlgren, Feldman, Gehan et al. 2015 Link
Setaria viridis, Setaria italica ~151,000 1 VIS, NIR, PSII Shoot Growth: Water-limited Feldman et al. 2017 Link
Sorghum bicolor 96,867 1 VIS, NIR Shoot Growth: Nitrogen/Water-limited Veley et al. 2017 Link

Download instructions

Follow the link to a specific dataset for further information about the specific ways the dataset is available.

Datasets available through HTTP (including Figshare, Zenodo, Dryad, etc.) can be downloaded directly using a web browser or with a command-line download utility such as wget or curl.

Datasets available through CyVerse can be accessed through the methods described above for HTTP through the CyVerse Data Commons or via the CyVerse Data Store (account required) via the path /iplant/home/shared/danforth_center/.

Datasets available through Globus Connect can be accessed by signing up for a Globus account and accessing the Danforth Center Bioinformatics Endpoint following the instructions at http://bioinformatics.readthedocs.io/en/latest/globus/.